Epigenetics & Chromatin

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		Review ATP-Dependent Chromatin Remodeling in the DNA Damage Response Hannes Lans, Jurgen A Marteijn, Wim Vermeulen Epigenetics & Chromatin 2012, 5:4 (30 January 2012) Abstract \| Provisional PDF \| PubMed
		Research Lysine Methyltransferase G9a is Not Required for DNMT3A/3B Anchoring to Methylated Nucleosomes and Maintenance of DNA Methylation in Somatic Cells Shikhar Sharma, Daniel S Gerke, Han F Han, Shinwu Jeong, Michael R Stallcup, Peter A Jones, Gangning Liang Epigenetics & Chromatin 2012, 5:3 (27 January 2012) Abstract \| Provisional PDF \| PubMed
		Research Knockdown of menin affects pre-mRNA processing and promoter fidelity at the interferon-gamma inducible IRF1 gene Lauren B Auriemma, Shaili Shah, Lara M Linden, Melissa A Henriksen Epigenetics & Chromatin 2012, 5:2 (12 January 2012) Abstract \| Full text \| PDF \| PubMed
		Review Enhancers and silencers: an integrated and simple model for their function. Petros Kolovos, Tobias A Knoch, Frank G Grosveld, Peter R Cook, Argyris Papantonis Epigenetics & Chromatin 2012, 5:1 (9 January 2012) Abstract \| Provisional PDF \| PubMed
		Research Enhancer-driven chromatin interactions during development promote escape from silencing by a long non-coding RNA Lisa Korostowski, Anjali Raval, Gillian Breuer, Nora Engel Epigenetics & Chromatin 2011, 4:21 (15 November 2011) Abstract \| Full text \| PDF \| PubMed
		Research Myc and Miz-1 have coordinate genomic functions including targeting Hox genes in human embryonic stem cells Natalia Varlakhanova, Rebecca Cotterman, Keith Bradnam, Ian Korf, Paul S Knoepfler Epigenetics & Chromatin 2011, 4:20 (4 November 2011) Abstract \| Full text \| PDF \| PubMed
		Methodology A proteomic approach for the identification of novel lysine methyltransferase substrates Dan Levy, Chih Long Liu, Ze Yang, Aaron M Newman, Ash A Alizadeh, Paul J Utz, Or Gozani Epigenetics & Chromatin 2011, 4:19 (24 October 2011) Abstract \| Full text \| PDF \| PubMed
		Research Proliferating cell nuclear antigen is required for loading of the SMCX/KMD5C histone demethylase onto chromatin Zhihui Liang, Marc Diamond, Johanna A Smith, Matthias Schnell, René Daniel Epigenetics & Chromatin 2011, 4:18 (13 October 2011) Abstract \| Full text \| PDF \| PubMed
		Research Pluripotency factor binding and Tsix expression act synergistically to repress Xist in undifferentiated embryonic stem cells Tatyana B Nesterova, Claire E Senner, Janina Schneider, Tilly Alcayna-Stevens, Anna Tattermusch, Myriam Hemberger, Neil Brockdorff Epigenetics & Chromatin 2011, 4:17 (7 October 2011) Abstract \| Full text \| PDF \| PubMed
		Research Chromatin regulated interchange between polycomb repressive complex 2 (PRC2)-Ezh2 and PRC2-Ezh1 complexes controls myogenin activation in skeletal muscle cells Lovorka Stojic, Zuzana Jasencakova, Carolina Prezioso, Alexandra Stützer, Beatrice Bodega, Diego Pasini, Rebecca Klingberg, Chiara Mozzetta, Raphael Margueron, Pier Puri, Dirk Schwarzer, Kristian Helin, Wolfgang Fischle, Valerio Orlando Epigenetics & Chromatin 2011, 4:16 (5 September 2011) Abstract \| Full text \| PDF \| PubMed
		Research Histone H1 interphase phosphorylation becomes largely established in G₁or early S phase and differs in G₁between T-lymphoblastoid cells and normal T cells Anna Gréen, Bettina Sarg, Henrik Gréen, Anita Lönn, Herbert H Lindner, Ingemar Rundquist Epigenetics & Chromatin 2011, 4:15 (5 August 2011) Abstract \| Full text \| PDF \| PubMed
		Research Allele-specific transcriptional elongation regulates monoallelic expression of the IGF2BP1 gene Brandon J Thomas, Eric D Rubio, Niklas Krumm, Pilib Ó Broin, Karol Bomsztyk, Piri Welcsh, John M Greally, Aaron A Golden, Anton Krumm Epigenetics & Chromatin 2011, 4:14 (3 August 2011) Abstract \| Full text \| PDF \| PubMed
		Research The relationship between transcription initiation RNAs and CCCTC-binding factor (CTCF) localization Ryan J Taft, Peter G Hawkins, John S Mattick, Kevin V Morris Epigenetics & Chromatin 2011, 4:13 (3 August 2011) Abstract \| Full text \| PDF \| PubMed
		Research H3K9me3-binding proteins are dispensable for SETDB1/H3K9me3-dependent retroviral silencing Irina A Maksakova, Preeti Goyal, Jörn Bullwinkel, Jeremy P Brown, Misha Bilenky, Dixie L Mager, Prim B Singh, Matthew C Lorincz Epigenetics & Chromatin 2011, 4:12 (20 July 2011) Abstract \| Full text \| PDF \| PubMed
		Research Methylation of H2AR29 is a novel repressive PRMT6 target Tanja Waldmann, Annalisa Izzo, Kinga Kamieniarz, Florian Richter, Christine Vogler, Bettina Sarg, Herbert Lindner, Nicolas L Young, Gerhard Mittler, Benjamin A Garcia, Robert Schneider Epigenetics & Chromatin 2011, 4:11 (20 July 2011) Abstract \| Full text \| PDF \| PubMed
		Methodology Genome-wide mapping of imprinted differentially methylated regions by DNA methylation profiling of human placentas from triploidies Ryan KC Yuen, Ruby Jiang, Maria S Peñaherrera, Deborah E McFadden, Wendy P Robinson Epigenetics & Chromatin 2011, 4:10 (13 July 2011) Abstract \| Full text \| PDF \| PubMed
		Research Generation of bivalent chromatin domains during cell fate decisions Marco De Gobbi, David Garrick, Magnus Lynch, Douglas Vernimmen, Jim R Hughes, Nicolas Goardon, Sidinh Luc, Karen M Lower, Jacqueline A Sloane-Stanley, Cristina Pina, Shamit Soneji, Raffaele Renella, Tariq Enver, Stephen Taylor, Sten Eirik W Jacobsen, Paresh Vyas, Richard J Gibbons, Douglas R Higgs Epigenetics & Chromatin 2011, 4:9 (6 June 2011) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary The hypothesis that bivalently modified genes are pre-marked for subsequent activation during differentiation is questioned as being over-simplistic, as further light is shed on the generation of bivalent chromatin domains during cell fate decisions.
		Correction Correction: Multiple sequence-directed possibilities provide a pool of nucleosome position choices in different states of activity of a gene Vinesh Vinayachandran, Rama-Haritha Pusarla, Purnima Bhargava Epigenetics & Chromatin 2011, 4:8 (7 May 2011) Abstract \| Full text \| PDF \| PubMed
		Research Extensive epigenetic reprogramming in human somatic tissues between fetus and adult Ryan KC Yuen, Sarah MA Neumann, Alexandra K Fok, Maria S Peñaherrera, Deborah E McFadden, Wendy P Robinson, Michael S Kobor Epigenetics & Chromatin 2011, 4:7 (5 May 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research Role of the ATPase/helicase maleless (MLE) in the assembly, targeting, spreading and function of the male-specific lethal (MSL) complex of Drosophila Rosa Morra, Ruth Yokoyama, Huiping Ling, John C Lucchesi Epigenetics & Chromatin 2011, 4:6 (12 April 2011) Abstract \| Full text \| PDF \| PubMed
		Research Heterogeneity in the kinetics of nuclear proteins and trajectories of substructures associated with heterochromatin Lenka Stixová, Eva Bártová, Pavel Matula, Ondřej Daněk, Soňa Legartová, Stanislav Kozubek Epigenetics & Chromatin 2011, 4:5 (18 March 2011) Abstract \| Full text \| PDF \| PubMed
		Methodology Quantitative analysis of polycomb response elements (PREs) at identical genomic locations distinguishes contributions of PRE sequence and genomic environment Helena Okulski, Birgit Druck, Sheetal Bhalerao, Leonie Ringrose Epigenetics & Chromatin 2011, 4:4 (16 March 2011) Abstract \| Full text \| PDF \| PubMed
		Research Distinct influences of tandem repeats and retrotransposons on CENH3 nucleosome positioning Jonathan I Gent, Kevin L Schneider, Christopher N Topp, Carmen Rodriguez, Gernot G Presting, R Kelly Dawe Epigenetics & Chromatin 2011, 4:3 (25 February 2011) Abstract \| Full text \| PDF \| PubMed \| F1000 Biology
		Research Dot1 binding induces chromatin rearrangements by histone methylation-dependent and -independent mechanisms Iris JE Stulemeijer, Brietta L Pike, Alex W Faber, Kitty F Verzijlbergen, Tibor van Welsem, Floor Frederiks, Tineke L Lenstra, Frank CP Holstege, Susan M Gasser, Fred van Leeuwen Epigenetics & Chromatin 2011, 4:2 (3 February 2011) Abstract \| Full text \| PDF \| PubMed
		Research Quantitative analysis of DNA methylation at all human imprinted regions reveals preservation of epigenetic stability in adult somatic tissue Kathryn Woodfine, Joanna E Huddleston, Adele Murrell Epigenetics & Chromatin 2011, 4:1 (31 January 2011) Abstract \| Full text \| PDF \| PubMed

	All
		Review ATP-Dependent Chromatin Remodeling in the DNA Damage Response Hannes Lans, Jurgen A Marteijn, Wim Vermeulen Epigenetics & Chromatin 2012, 5:4 (30 January 2012) Abstract \| Provisional PDF \| PubMed
		Research Lysine Methyltransferase G9a is Not Required for DNMT3A/3B Anchoring to Methylated Nucleosomes and Maintenance of DNA Methylation in Somatic Cells Shikhar Sharma, Daniel S Gerke, Han F Han, Shinwu Jeong, Michael R Stallcup, Peter A Jones, Gangning Liang Epigenetics & Chromatin 2012, 5:3 (27 January 2012) Abstract \| Provisional PDF \| PubMed
		Research Knockdown of menin affects pre-mRNA processing and promoter fidelity at the interferon-gamma inducible IRF1 gene Lauren B Auriemma, Shaili Shah, Lara M Linden, Melissa A Henriksen Epigenetics & Chromatin 2012, 5:2 (12 January 2012) Abstract \| Full text \| PDF \| PubMed
		Review Enhancers and silencers: an integrated and simple model for their function. Petros Kolovos, Tobias A Knoch, Frank G Grosveld, Peter R Cook, Argyris Papantonis Epigenetics & Chromatin 2012, 5:1 (9 January 2012) Abstract \| Provisional PDF \| PubMed
		Research Enhancer-driven chromatin interactions during development promote escape from silencing by a long non-coding RNA Lisa Korostowski, Anjali Raval, Gillian Breuer, Nora Engel Epigenetics & Chromatin 2011, 4:21 (15 November 2011) Abstract \| Full text \| PDF \| PubMed
		Research Myc and Miz-1 have coordinate genomic functions including targeting Hox genes in human embryonic stem cells Natalia Varlakhanova, Rebecca Cotterman, Keith Bradnam, Ian Korf, Paul S Knoepfler Epigenetics & Chromatin 2011, 4:20 (4 November 2011) Abstract \| Full text \| PDF \| PubMed
		Methodology A proteomic approach for the identification of novel lysine methyltransferase substrates Dan Levy, Chih Long Liu, Ze Yang, Aaron M Newman, Ash A Alizadeh, Paul J Utz, Or Gozani Epigenetics & Chromatin 2011, 4:19 (24 October 2011) Abstract \| Full text \| PDF \| PubMed
		Research Proliferating cell nuclear antigen is required for loading of the SMCX/KMD5C histone demethylase onto chromatin Zhihui Liang, Marc Diamond, Johanna A Smith, Matthias Schnell, René Daniel Epigenetics & Chromatin 2011, 4:18 (13 October 2011) Abstract \| Full text \| PDF \| PubMed
		Research Pluripotency factor binding and Tsix expression act synergistically to repress Xist in undifferentiated embryonic stem cells Tatyana B Nesterova, Claire E Senner, Janina Schneider, Tilly Alcayna-Stevens, Anna Tattermusch, Myriam Hemberger, Neil Brockdorff Epigenetics & Chromatin 2011, 4:17 (7 October 2011) Abstract \| Full text \| PDF \| PubMed
		Research Chromatin regulated interchange between polycomb repressive complex 2 (PRC2)-Ezh2 and PRC2-Ezh1 complexes controls myogenin activation in skeletal muscle cells Lovorka Stojic, Zuzana Jasencakova, Carolina Prezioso, Alexandra Stützer, Beatrice Bodega, Diego Pasini, Rebecca Klingberg, Chiara Mozzetta, Raphael Margueron, Pier Puri, Dirk Schwarzer, Kristian Helin, Wolfgang Fischle, Valerio Orlando Epigenetics & Chromatin 2011, 4:16 (5 September 2011) Abstract \| Full text \| PDF \| PubMed
		Research Histone H1 interphase phosphorylation becomes largely established in G₁or early S phase and differs in G₁between T-lymphoblastoid cells and normal T cells Anna Gréen, Bettina Sarg, Henrik Gréen, Anita Lönn, Herbert H Lindner, Ingemar Rundquist Epigenetics & Chromatin 2011, 4:15 (5 August 2011) Abstract \| Full text \| PDF \| PubMed
		Research Allele-specific transcriptional elongation regulates monoallelic expression of the IGF2BP1 gene Brandon J Thomas, Eric D Rubio, Niklas Krumm, Pilib Ó Broin, Karol Bomsztyk, Piri Welcsh, John M Greally, Aaron A Golden, Anton Krumm Epigenetics & Chromatin 2011, 4:14 (3 August 2011) Abstract \| Full text \| PDF \| PubMed
		Research The relationship between transcription initiation RNAs and CCCTC-binding factor (CTCF) localization Ryan J Taft, Peter G Hawkins, John S Mattick, Kevin V Morris Epigenetics & Chromatin 2011, 4:13 (3 August 2011) Abstract \| Full text \| PDF \| PubMed
		Research H3K9me3-binding proteins are dispensable for SETDB1/H3K9me3-dependent retroviral silencing Irina A Maksakova, Preeti Goyal, Jörn Bullwinkel, Jeremy P Brown, Misha Bilenky, Dixie L Mager, Prim B Singh, Matthew C Lorincz Epigenetics & Chromatin 2011, 4:12 (20 July 2011) Abstract \| Full text \| PDF \| PubMed
		Research Methylation of H2AR29 is a novel repressive PRMT6 target Tanja Waldmann, Annalisa Izzo, Kinga Kamieniarz, Florian Richter, Christine Vogler, Bettina Sarg, Herbert Lindner, Nicolas L Young, Gerhard Mittler, Benjamin A Garcia, Robert Schneider Epigenetics & Chromatin 2011, 4:11 (20 July 2011) Abstract \| Full text \| PDF \| PubMed
		Methodology Genome-wide mapping of imprinted differentially methylated regions by DNA methylation profiling of human placentas from triploidies Ryan KC Yuen, Ruby Jiang, Maria S Peñaherrera, Deborah E McFadden, Wendy P Robinson Epigenetics & Chromatin 2011, 4:10 (13 July 2011) Abstract \| Full text \| PDF \| PubMed
		Research Generation of bivalent chromatin domains during cell fate decisions Marco De Gobbi, David Garrick, Magnus Lynch, Douglas Vernimmen, Jim R Hughes, Nicolas Goardon, Sidinh Luc, Karen M Lower, Jacqueline A Sloane-Stanley, Cristina Pina, Shamit Soneji, Raffaele Renella, Tariq Enver, Stephen Taylor, Sten Eirik W Jacobsen, Paresh Vyas, Richard J Gibbons, Douglas R Higgs Epigenetics & Chromatin 2011, 4:9 (6 June 2011) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary The hypothesis that bivalently modified genes are pre-marked for subsequent activation during differentiation is questioned as being over-simplistic, as further light is shed on the generation of bivalent chromatin domains during cell fate decisions.
		Correction Correction: Multiple sequence-directed possibilities provide a pool of nucleosome position choices in different states of activity of a gene Vinesh Vinayachandran, Rama-Haritha Pusarla, Purnima Bhargava Epigenetics & Chromatin 2011, 4:8 (7 May 2011) Abstract \| Full text \| PDF \| PubMed
		Research Extensive epigenetic reprogramming in human somatic tissues between fetus and adult Ryan KC Yuen, Sarah MA Neumann, Alexandra K Fok, Maria S Peñaherrera, Deborah E McFadden, Wendy P Robinson, Michael S Kobor Epigenetics & Chromatin 2011, 4:7 (5 May 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
		Research Role of the ATPase/helicase maleless (MLE) in the assembly, targeting, spreading and function of the male-specific lethal (MSL) complex of Drosophila Rosa Morra, Ruth Yokoyama, Huiping Ling, John C Lucchesi Epigenetics & Chromatin 2011, 4:6 (12 April 2011) Abstract \| Full text \| PDF \| PubMed
		Research Heterogeneity in the kinetics of nuclear proteins and trajectories of substructures associated with heterochromatin Lenka Stixová, Eva Bártová, Pavel Matula, Ondřej Daněk, Soňa Legartová, Stanislav Kozubek Epigenetics & Chromatin 2011, 4:5 (18 March 2011) Abstract \| Full text \| PDF \| PubMed
		Methodology Quantitative analysis of polycomb response elements (PREs) at identical genomic locations distinguishes contributions of PRE sequence and genomic environment Helena Okulski, Birgit Druck, Sheetal Bhalerao, Leonie Ringrose Epigenetics & Chromatin 2011, 4:4 (16 March 2011) Abstract \| Full text \| PDF \| PubMed
		Research Distinct influences of tandem repeats and retrotransposons on CENH3 nucleosome positioning Jonathan I Gent, Kevin L Schneider, Christopher N Topp, Carmen Rodriguez, Gernot G Presting, R Kelly Dawe Epigenetics & Chromatin 2011, 4:3 (25 February 2011) Abstract \| Full text \| PDF \| PubMed \| F1000 Biology
		Research Dot1 binding induces chromatin rearrangements by histone methylation-dependent and -independent mechanisms Iris JE Stulemeijer, Brietta L Pike, Alex W Faber, Kitty F Verzijlbergen, Tibor van Welsem, Floor Frederiks, Tineke L Lenstra, Frank CP Holstege, Susan M Gasser, Fred van Leeuwen Epigenetics & Chromatin 2011, 4:2 (3 February 2011) Abstract \| Full text \| PDF \| PubMed
		Research Quantitative analysis of DNA methylation at all human imprinted regions reveals preservation of epigenetic stability in adult somatic tissue Kathryn Woodfine, Joanna E Huddleston, Adele Murrell Epigenetics & Chromatin 2011, 4:1 (31 January 2011) Abstract \| Full text \| PDF \| PubMed